That is a bug -- when loading the Attributes tab, the Exclude non-Archived, Exclude System, and/or Exclude Hidden checkboxes could be checked when the related properties aren't set. To support older project file formats, that dialog page converts old data for some actions that use this visual component, but for the Set File Attributes action it (incorrectly) uses other data from similar properties on the Set Attributes tab, resulting in the glitch. The state of the controls when OKing the dialog is what actually gets stored and used when building the step. We'll fix this in the next release. Thanks.
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