I don't think I would like it if I couldn't see children in the data explorer pane since I use that pane quite heavily and don't think of nodes with multiple parents as any different from nodes with 1 parent (maybe it is the couple years using personal brain).
I understand what you are saying though, maybe if the default delete stayed as simply removing the logical link, but if there could be an additional right-click option to delete the child from all parents that would provide the desired flexiblity.
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