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When opening a database, UR only populates the Data Explorer/Search trees with the nodes that are currently expanded, so as long as you don't keep all nodes expanded, performance should remain very good even with many thousands of items. The two UR databases I use on a regular basis currently have ~ 4,000 and 10,000 items/links, respectively, and startup is almost instantaneous (and one is even located on a network share).
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