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What you're requesting negates one of the fundamental goals of UR, which is high performance. A lot of work is done to optimize populating the tree and search results, but the only way to implement what you're describing is to always load every single item in the database, in order to determine which ones should be excluded. This would add overhead of about 1 second for every 2.5K items in the database, for every search or refresh of the tree. Currently, loading the tree or search results is typically instant, even for databases with thousands of items. And the effort to implement this would be quite large.
Sorry, but it's not going to happen.
And it was never intended for fully replicate the tree in the search results, so I don't consider this a bug.
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